Get Read from a FASTA in One Line
by: onestop_data
Unfortunately, getting a read from a FASTA file can be challenging for large files if you try to open it in text edit. Have you generated …
Easy Convert BAM to FASTA
by: onestop_data
How many times have you wished to extract the sequences from a BAM file so you could convert the BAM to a FASTA file? This happened …
Reverse Complement one line script
by: onestop_data
Finding the reverse complement for DNA is a pretty common task in bioinformatics. Below is a simple Python implementation of how the task can be accomplished. …
Easy GitHub Repository Tagging
by: onestop_data
Tagging a GitHub repository is pretty straightforward. Please see below how you can create the tag for the repo, push it to git, and delete eventually …
A Quick Way to Compare Files
by: onestop_data
Have you heard about filecmp and how to use it for a quick way to compare files in Python? Sometimes when writing a unit test in …
Simple Script for Shannon Entropy
by: onestop_data
This tutorial presents a Python implementation of the Shannon Entropy algorithm to compute Entropy on a DNA/Protein sequence.
Easy GitHub SSH Setup
by: onestop_data
GitHub SSH setup is one of the things that you do once every time you get a new computer or gain access to a new server. …
Easy Conversion FASTQ to FASTA
by: onestop_data
One of the most common tasks in bioinformatics data analysis is to convert a FASTQ file into FASTA. Unfortunately, some programs only accept input in FASTA …
How to Find the Length of the List in Python
by: onestop_data
This short article shows how to find the length of list in Python. The same function can be used to get the number of elements in …
Data Science Careers carving our professional paths
by: onestop_data
Data science (or part of any of the data science careers) applies statistical procedures ranging from data transformations, data modeling, statistical and machine learning modeling, and …