Author: onestop_data

Data Scientist who loves to share some knowledge on the field.

Bioinformatics

Easy NCBI Genome Download

onestop_databy:

NCBI genome download can be a very unpleasant job. This page shows how to use ncbi-genome-download to easily download NCBI genomes with a single command line.

Unix

Find All Files Containing a Specific Text on Linux or macOS

onestop_databy:

This short tutorial teaches you how to find all files containing a specific text on linux or macOS using either the command find or grep. Find …

Bioinformatics

Fast Conversion of Lowercase Sequences to Uppercase in FASTA Format

onestop_databy:

This tutorial teaches two approaches to convert lowercase to uppercase sequences in FASTA format. In bioinformatics, a FASTA with lowercase bases implies that regions are low …

Unix

The Easiest Way on How to Decompress Using gzip

onestop_databy:

This short tutorial teaches you the easiest way on how to decompress a file using gzip — uncompressing gz files will never be a problem again.

Unix

How to Copy a Directory in Linux

onestop_databy:

This short tutorial teaches the easiest way on How to Copy a Directory in Linux – more specifically using the command line.

Data AnalysisData visualization

The Easiest way to Plot a Histogram in Python – Step-by-Step

onestop_databy:

Here you will learn what is the easiest way to plot a histogram in Python. We make use of the seaborn library to create the distribution.

Bioinformatics

Quick Sequencing Depth and Coverage Check

onestop_databy:

This tutorial teaches how to run a quick sequencing depth and coverage check for one or more reference sequences.

Bioinformatics

The Fastest Way to Read a FASTA in Python

onestop_databy:

This tutorial teaches a fast approach on how to read sequences from large FASTA files in Python using Pysam.

Python

Easy way to sort a dictionary by key and value Python

onestop_databy:

Do you know how to sort a dictionary by value in Python? This is one of those uncommon dictionary operations that sometimes you need to do …

Data AnalysisPython

Easy Outlier Detection in Python

onestop_databy:

I believe you are here to learn to detect outliers in Python. You probably have read the book “Outliers” by Malcolm Gladwell – but here we …