Category: Bioinformatics

This webpage provides concise Bioinformatics tutorials that are helpful for both beginners and experienced learners. The tutorials cover fundamental concepts required for learning the topic, as well as advanced techniques. Specifically, the tutorials focus on Bioinformatics with Python, definitions, job roles, sequencing, metagenomic analysis, Samtools, and more.

Bioinformatics

Big Binary Indexed (BBI) file Parsing with Python

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13 de February de 2023

This tutorial reviews some important information on Big Binary Indexed (BBI) files and how to parse the using Python.

Bioinformatics • Data Analysis • Machine Learning

The Interval Scheduling Algorithm and its Applications

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12 de February de 2023

This tutorial talks about the Interval scheduling algorithm presents a Python version of it and shares its applications in real-life.

Bioinformatics • Data Analysis • Data visualization

The Bioinformatics Target Enrichment – 101

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12 de February de 2023

This blog post describes some important topics when it comes to target enrichment and how to use bioinformatics tools to analyze the data.

Bioinformatics • Machine Learning

Non-negative Least Squares: Applications and its Use in Python

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12 de February de 2023

This blog post talks about non-negative least squares and its use in bioinformatics, and how to use the method with Python.

Bioinformatics

Creating a Multiple Sequence Alignment (MSA) Aware of Forward and Reverse Complement Directions – Easy

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29 de December de 2021

This blog post teaches an easy way how to create a multiple sequence alignment (MSA) aware of forward and reverse complement directions.

Bioinformatics • Unix

How to Create a RamDisk on Linux – Step-by-Step

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21 de December de 2021

This tutorial will teach you how to create a ram disk on a Linux distribution and unmount it when needed. This lesson can be used to …

Bioinformatics

calculate-melting-temperature

Calculate DNA Melting Temperature in Python – Step-by-Step

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8 de April de 2021

This tutorial shows how to calculate DNA melting temperature (Tm) in Python using Biopython, installed using bioconda.

Bioinformatics

mask-low-complexity-regions

Masking Low Complexity Regions – Step-by-Step

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8 de April de 2021

This tutorial teaches how to mask low complexity regions in a FASTA file using BBMap.

Bioinformatics

subsample paired fastq

Fast FASTA/FASTQ Random Subsampling

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11 de March de 2021

This short tutorial teaches how to subsample a paired FASTQ, single FASTQ, pair FASTA, or single FASTA file to a specific number of reads. This can …

Bioinformatics

easy-ncbi-genome-download

Easy NCBI Genome Download

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1 de February de 2021

NCBI genome download can be a very unpleasant job. This page shows how to use NCBI-genome-download to download NCBI genomes with a single command line easily.