Remove Poor Reads in FASTQ/A
by: onestop_data
Have you needed to Clean your FASTA/FASTQ file? I know it is a common task. Back in the day, I found a Python 2 script to …
Simple Scatter Plot in Python
by: onestop_data
Generating a Scatter Plot in Python is probably one of the most common plots, and it can easily be accomplished. This tutorial shows using how using …
Effortless Recruitment Plot
by: onestop_data
Creating a recruitment plot can be a pain when you don’t have the right tool. A fragment recruitment plot is a great way to visualize how …
Top 6 New Features in Python 3.8
by: onestop_data
This blog post will describe some of the top features added to Python 3.8. Are you one of those Python people like me that are resistant …
Ridiculously Simple Tips for a Python Dictionary
by: onestop_data
This tutorial teaches how to use the Python dictionary, and it will focus on dictionary get, append, update, sort, comprehension, etc. Moreover, it will convince you …
Get Read from a FASTA in One Line
by: onestop_data
Unfortunately, getting a read from a FASTA file can be challenging for large files if you try to open it in text edit. Have you generated …
Easy Convert BAM to FASTA
by: onestop_data
How many times have you wished to extract the sequences from a BAM file so you could convert the BAM to a FASTA file? This happened …
Reverse Complement one line script
by: onestop_data
Finding the reverse complement for DNA is a pretty common task in bioinformatics. Below is a simple Python implementation on how the task can be accomplished. …
Easy GitHub Repository Tagging
by: onestop_data
Tagging a GitHub repository is pretty straightforward. Please see below how you can create the tag for the repo, push it to git, and delete eventually …
A Quick Way to Compare Files
by: onestop_data
Have you heard about filecmp and how to use it for a quick way to compare files in Python? Sometimes when writing a unit test in …